IL_6VZ3_139

3D structure

PDB id

6VZ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex D2 (TTC-D2) containing mRNA with a 27 nt long spacer

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

6VZ3|1|a|A|1801, 6VZ3|1|a|C|1816, 6VZ3|1|a|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VZ3_139 not in the Motif Atlas

Homologous match to IL_5J7L_313

Geometric discrepancy: 0.049

The information below is about IL_5J7L_313

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

6VZ3|1|a|U|1798
6VZ3|1|a|G|1799
6VZ3|1|a|C|1800
6VZ3|1|a|A|1801
6VZ3|1|a|A|1802
6VZ3|1|a|A|1803
6VZ3|1|a|C|1804
*
6VZ3|1|a|G|1813
6VZ3|1|a|G|1814
6VZ3|1|a|A|1815
6VZ3|1|a|C|1816
6VZ3|1|a|G|1817
6VZ3|1|a|U|1818
6VZ3|1|a|A|1819
6VZ3|1|a|U|1820
6VZ3|1|a|A|1821

Current chains

Chain a

23S rRNA

Nearby chains

Chain D

Small subunit ribosomal RNA; SSU rRNA

Chain h

50S ribosomal protein L2