IL_6VZ5_103

3D structure

PDB id

6VZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex D3 (TTC-D3) containing mRNA with a 21 nt long spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

UUAAGUG*CUAAA

Length

12 nucleotides

Bulged bases

6VZ5|1|a|A|1143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VZ5_103 not in the Motif Atlas

Geometric match to IL_5J7L_280

Geometric discrepancy: 0.0961

The information below is about IL_5J7L_280

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.5

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

6VZ5|1|a|U|1018
6VZ5|1|a|U|1019
6VZ5|1|a|A|1020
6VZ5|1|a|A|1021
6VZ5|1|a|G|1022
6VZ5|1|a|U|1023
6VZ5|1|a|G|1024
*
6VZ5|1|a|C|1140
6VZ5|1|a|U|1141
6VZ5|1|a|A|1142
6VZ5|1|a|A|1143
6VZ5|1|a|A|1144

Current chains

Chain a

23S rRNA

Nearby chains

Chain q

50S ribosomal protein L36

Chain s

50S ribosomal protein L13