IL_6VZ5_139

3D structure

PDB id

6VZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex D3 (TTC-D3) containing mRNA with a 21 nt long spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

6VZ5|1|a|A|1801, 6VZ5|1|a|C|1816, 6VZ5|1|a|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VZ5_139 not in the Motif Atlas

Homologous match to IL_5J7L_313

Geometric discrepancy: 0.0489

The information below is about IL_5J7L_313

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

6VZ5|1|a|U|1798
6VZ5|1|a|G|1799
6VZ5|1|a|C|1800
6VZ5|1|a|A|1801
6VZ5|1|a|A|1802
6VZ5|1|a|A|1803
6VZ5|1|a|C|1804
*
6VZ5|1|a|G|1813
6VZ5|1|a|G|1814
6VZ5|1|a|A|1815
6VZ5|1|a|C|1816
6VZ5|1|a|G|1817
6VZ5|1|a|U|1818
6VZ5|1|a|A|1819
6VZ5|1|a|U|1820
6VZ5|1|a|A|1821

Current chains

Chain a

23S rRNA

Nearby chains

Chain D

Small subunit ribosomal RNA; SSU rRNA

Chain h

50S ribosomal protein L2