IL_6VZ7_035

3D structure

PDB id

6VZ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex C1 (TTC-C1) containing a 27 nt long mRNA spacer, NusG, and fMet-tRNAs at P-site and E-site

Experimental method

ELECTRON MICROSCOPY

Resolution

7 Å

Loop

Sequence

UGUAG*CGUAGAGA

Length

13 nucleotides

Bulged bases

6VZ7|1|D|A|702

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VZ7_035 not in the Motif Atlas

Homologous match to IL_5J7L_035

Geometric discrepancy: 0.091

The information below is about IL_5J7L_035

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_01488.3

Basepair signature

cWW-tSS-tSH-L-R-tHS-L-cWW

Number of instances in this motif group

10

Unit IDs

6VZ7|1|D|U|684
6VZ7|1|D|G|685
6VZ7|1|D|U|686
6VZ7|1|D|A|687
6VZ7|1|D|G|688
*
6VZ7|1|D|C|699
6VZ7|1|D|G|700
6VZ7|1|D|U|701
6VZ7|1|D|A|702
6VZ7|1|D|G|703
6VZ7|1|D|A|704
6VZ7|1|D|G|705
6VZ7|1|D|A|706

Current chains

Chain D

16S rRNA

Nearby chains

Chain Q

30S ribosomal protein S11

Chain a

Large subunit ribosomal RNA; LSU rRNA