IL_6VZ7_079

3D structure

PDB id

6VZ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex C1 (TTC-C1) containing a 27 nt long mRNA spacer, NusG, and fMet-tRNAs at P-site and E-site

Experimental method

ELECTRON MICROSCOPY

Resolution

7 Å

Loop

Sequence

CCU*AUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VZ7_079 not in the Motif Atlas

Geometric match to IL_5J7L_257

Geometric discrepancy: 0.0465

The information below is about IL_5J7L_257

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

6VZ7|1|a|C|564
6VZ7|1|a|C|565
6VZ7|1|a|U|566
*
6VZ7|1|a|A|575
6VZ7|1|a|U|576
6VZ7|1|a|G|577

Current chains

Chain a

23S rRNA

Nearby chains

Chain 0

50S ribosomal protein L21

Chain l

50S ribosomal protein L4

Chain u

50S ribosomal protein L15

Chain z

50S ribosomal protein L20