IL_6W2T_030
3D structure
- PDB id
- 6W2T (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Cricket Paralysis Virus 5-UTR IRES (CrPV 5-UTR-IRES) bound to the small ribosomal subunit in the closed state (Class 2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.36 Å
Loop
- Sequence
- UAUCAA*UGACCACG
- Length
- 14 nucleotides
- Bulged bases
- 6W2T|1|a|U|361, 6W2T|1|a|C|399
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6W2T_030 not in the Motif Atlas
- Homologous match to IL_4V88_402
- Geometric discrepancy: 0.1294
- The information below is about IL_4V88_402
- Detailed Annotation
- Kink-turn with non-sequential stacking
- Broad Annotation
- Kink-turn
- Motif group
- IL_45067.5
- Basepair signature
- cWW-tSH-tSS-tHS-R-cWW-cWW-R
- Number of instances in this motif group
- 16
Unit IDs
6W2T|1|a|U|359
6W2T|1|a|A|360
6W2T|1|a|U|361
6W2T|1|a|C|362
6W2T|1|a|A|363
6W2T|1|a|A|364
*
6W2T|1|a|U|396
6W2T|1|a|G|397
6W2T|1|a|A|398
6W2T|1|a|C|399
6W2T|1|a|C|400
6W2T|1|a|A|401
6W2T|1|a|C|402
6W2T|1|a|G|403
Current chains
- Chain a
- 18S rRNA
Nearby chains
- Chain J
- eS8
- Chain M
- uS17
- Chain Y
- uS12
Coloring options: