IL_6W2T_071

3D structure

PDB id

6W2T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Cricket Paralysis Virus 5-UTR IRES (CrPV 5-UTR-IRES) bound to the small ribosomal subunit in the closed state (Class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.36 Å

Loop

Sequence

ACCA*UCCCU

Length

9 nucleotides

Bulged bases

6W2T|1|a|C|1215, 6W2T|1|a|C|1216

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6W2T_071 not in the Motif Atlas

Homologous match to IL_4V88_443

Geometric discrepancy: 0.1186

The information below is about IL_4V88_443

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.9

Basepair signature

cWW-cWS-cHS-L-cWW-tWH

Number of instances in this motif group

15

Unit IDs

6W2T|1|a|A|1214
6W2T|1|a|C|1215
6W2T|1|a|C|1216
6W2T|1|a|A|1217
*
6W2T|1|a|U|1681
6W2T|1|a|C|1682
6W2T|1|a|C|1683
6W2T|1|a|C|1684
6W2T|1|a|U|1685

Current chains

Chain a

18S rRNA

Nearby chains

Chain G

uS7

Chain R

uS9

Chain d

eS28