IL_6W2T_110
3D structure
- PDB id
- 6W2T (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Cricket Paralysis Virus 5-UTR IRES (CrPV 5-UTR-IRES) bound to the small ribosomal subunit in the closed state (Class 2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.36 Å
Loop
- Sequence
- UGCAUGG*UCUGUGAUG
- Length
- 16 nucleotides
- Bulged bases
- 6W2T|1|a|C|1331, 6W2T|1|a|U|1494, 6W2T|1|a|G|1497
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6W2T_110 not in the Motif Atlas
- Homologous match to IL_8P9A_439
- Geometric discrepancy: 0.111
- The information below is about IL_8P9A_439
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_99893.1
- Basepair signature
- cWW-tHS-tWH-cWH-cWW-L-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
6W2T|1|a|U|1329
6W2T|1|a|G|1330
6W2T|1|a|C|1331
6W2T|1|a|A|1332
6W2T|1|a|U|1333
6W2T|1|a|G|1334
6W2T|1|a|G|1335
*
6W2T|1|a|U|1492
6W2T|1|a|C|1493
6W2T|1|a|U|1494
6W2T|1|a|G|1495
6W2T|1|a|U|1496
6W2T|1|a|G|1497
6W2T|1|a|A|1498
6W2T|1|a|U|1499
6W2T|1|a|G|1500
Current chains
- Chain a
- 18S rRNA
Nearby chains
- Chain E
- uS3
- Chain L
- eS10
- Chain V
- uS10
- Chain e
- eS29
Coloring options: