IL_6W6L_094

3D structure

PDB id

6W6L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human ribosome-TMCO1 translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.84 Å

Loop

Sequence

GUAGUAG*CGAAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6W6L_094 not in the Motif Atlas

Homologous match to IL_5TBW_061

Geometric discrepancy: 0.0664

The information below is about IL_5TBW_061

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_76042.3

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

6W6L|1|t|G|2337
6W6L|1|t|U|2338
6W6L|1|t|A|2339
6W6L|1|t|G|2340
6W6L|1|t|U|2341
6W6L|1|t|A|2342
6W6L|1|t|G|2343
*
6W6L|1|t|C|3829
6W6L|1|t|G|3830
6W6L|1|t|A|3831
6W6L|1|t|A|3832
6W6L|1|t|A|3833
6W6L|1|t|C|3834

Current chains

Chain t

28S ribosomal RNA

Nearby chains

Chain C

60S ribosomal protein L4

Chain Q

60S ribosomal protein L17