IL_6W6L_119

3D structure

PDB id

6W6L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human ribosome-TMCO1 translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.84 Å

Loop

Sequence

UG*UAAA

Length

6 nucleotides

Bulged bases

6W6L|1|t|A|3717, 6W6L|1|t|A|3718

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6W6L_119 not in the Motif Atlas

Homologous match to IL_5TBW_085

Geometric discrepancy: 0.0834

The information below is about IL_5TBW_085

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_82107.1

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

6W6L|1|t|U|3675
6W6L|1|t|G|3676
*
6W6L|1|t|U|3716
6W6L|1|t|A|3717
6W6L|1|t|A|3718
6W6L|1|t|A|3719

Current chains

Chain t

28S ribosomal RNA

Nearby chains

Chain A

60S ribosomal protein L8