IL_6W6L_143

3D structure

PDB id

6W6L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human ribosome-TMCO1 translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.84 Å

Loop

Sequence

CCAU*AGGCG

Length

9 nucleotides

Bulged bases

6W6L|1|t|C|4682

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6W6L_143 not in the Motif Atlas

Homologous match to IL_8C3A_123

Geometric discrepancy: 0.1572

The information below is about IL_8C3A_123

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

6W6L|1|t|C|4544
6W6L|1|t|C|4545
6W6L|1|t|A|4546
6W6L|1|t|U|4547
*
6W6L|1|t|A|4679
6W6L|1|t|G|4680
6W6L|1|t|G|4681
6W6L|1|t|C|4682
6W6L|1|t|G|4683

Current chains

Chain t

28S ribosomal RNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain P

60S ribosomal protein L13a