IL_6W6L_145

3D structure

PDB id

6W6L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human ribosome-TMCO1 translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.84 Å

Loop

Sequence

CUCAGUAC*GGAACCG

Length

15 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6W6L_145 not in the Motif Atlas

Homologous match to IL_8C3A_125

Geometric discrepancy: 0.1264

The information below is about IL_8C3A_125

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.8

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

6W6L|1|t|C|4558
6W6L|1|t|U|4559
6W6L|1|t|C|4560
6W6L|1|t|A|4561
6W6L|1|t|G|4562
6W6L|1|t|U|4563
6W6L|1|t|A|4564
6W6L|1|t|C|4565
*
6W6L|1|t|G|4570
6W6L|1|t|G|4571
6W6L|1|t|A|4572
6W6L|1|t|A|4573
6W6L|1|t|C|4574
6W6L|1|t|C|4575
6W6L|1|t|G|4576

Current chains

Chain t

28S ribosomal RNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain J

60S ribosomal protein L9

Chain W

60S ribosomal protein L23