IL_6W6P_038

3D structure

PDB id

6W6P (explore in PDB, NAKB, or RNA 3D Hub)

Description

MultiBody Refinement of 70S Ribosome from Enterococcus faecalis

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UUAAGUG*CUAAA

Length

12 nucleotides

Bulged bases

6W6P|1|A|A|1183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6W6P_038 not in the Motif Atlas

Geometric match to IL_5J7L_280

Geometric discrepancy: 0.094

The information below is about IL_5J7L_280

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.5

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

6W6P|1|A|U|1058
6W6P|1|A|U|1059
6W6P|1|A|A|1060
6W6P|1|A|A|1061
6W6P|1|A|G|1062
6W6P|1|A|U|1063
6W6P|1|A|G|1064
*
6W6P|1|A|C|1180
6W6P|1|A|U|1181
6W6P|1|A|A|1182
6W6P|1|A|A|1183
6W6P|1|A|A|1184

Current chains

Chain A

23S rRNA

Nearby chains

Chain 6

50S ribosomal protein L36

Chain G

50S ribosomal protein L6

Chain K

50S ribosomal protein L13