IL_6W7W_014

3D structure

PDB id

6W7W (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S-Inactive-low-Mg2+ Class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GAUUAG*CGACGAUC

Length

14 nucleotides

Bulged bases

6W7W|1|2|U|244, 6W7W|1|2|C|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6W7W_014 not in the Motif Atlas

Geometric match to IL_4V88_402

Geometric discrepancy: 0.253

The information below is about IL_4V88_402

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_45067.5

Basepair signature

cWW-tSH-tSS-tHS-R-cWW-cWW-R

Number of instances in this motif group

16

Unit IDs

6W7W|1|2|G|242
6W7W|1|2|A|243
6W7W|1|2|U|244
6W7W|1|2|U|245
6W7W|1|2|A|246
6W7W|1|2|G|247
*
6W7W|1|2|C|277
6W7W|1|2|G|278
6W7W|1|2|A|279
6W7W|1|2|C|280
6W7W|1|2|G|281
6W7W|1|2|A|282
6W7W|1|2|U|283
6W7W|1|2|C|284

Current chains

Chain 2

16S rRNA

Nearby chains

Chain K

30S ribosomal protein S12

Chain P

30S ribosomal protein S17