IL_6WD3_067

3D structure

PDB id

6WD3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure II-B1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

6WD3|1|1|A|1801, 6WD3|1|1|C|1816, 6WD3|1|1|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WD3_067 not in the Motif Atlas

Homologous match to IL_5J7L_313

Geometric discrepancy: 0.1011

The information below is about IL_5J7L_313

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

6WD3|1|1|U|1798
6WD3|1|1|G|1799
6WD3|1|1|C|1800
6WD3|1|1|A|1801
6WD3|1|1|A|1802
6WD3|1|1|A|1803
6WD3|1|1|C|1804
*
6WD3|1|1|G|1813
6WD3|1|1|G|1814
6WD3|1|1|A|1815
6WD3|1|1|C|1816
6WD3|1|1|G|1817
6WD3|1|1|U|1818
6WD3|1|1|A|1819
6WD3|1|1|U|1820
6WD3|1|1|A|1821

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain 3

Small subunit ribosomal RNA; SSU rRNA

Chain b

50S ribosomal protein L2