3D structure

PDB id
6WD3 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure II-B1)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.6 Å

Loop

Sequence
UGAAAUCC*GAACUG
Length
14 nucleotides
Bulged bases
6WD3|1|3|U|632
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6WD3_139 not in the Motif Atlas
Homologous match to IL_5J7L_030
Geometric discrepancy: 0.1638
The information below is about IL_5J7L_030
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_78349.3
Basepair signature
cWW-L-R-L-R-L-R-L-cWW-L-L
Number of instances in this motif group
2

Unit IDs

6WD3|1|3|U|605
6WD3|1|3|G|606
6WD3|1|3|A|607
6WD3|1|3|A|608
6WD3|1|3|A|609
6WD3|1|3|U|610
6WD3|1|3|C|611
6WD3|1|3|C|612
*
6WD3|1|3|G|628
6WD3|1|3|A|629
6WD3|1|3|A|630
6WD3|1|3|C|631
6WD3|1|3|U|632
6WD3|1|3|G|633

Current chains

Chain 3
16S ribosomal RNA

Nearby chains

Chain I
30S ribosomal protein S4
Chain M
30S ribosomal protein S8
Chain U
30S ribosomal protein S16
Chain V
30S ribosomal protein S17

Coloring options:


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