3D structure

PDB id
6WDC (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure IV-B)
Experimental method
ELECTRON MICROSCOPY
Resolution
4.2 Å

Loop

Sequence
GAUUAG*CGACGAUC
Length
14 nucleotides
Bulged bases
6WDC|1|3|U|244, 6WDC|1|3|C|280
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6WDC_123 not in the Motif Atlas
Homologous match to IL_4LFB_011
Geometric discrepancy: 0.1762
The information below is about IL_4LFB_011
Detailed Annotation
Kink-turn with non-sequential stacking
Broad Annotation
Kink-turn
Motif group
IL_46174.3
Basepair signature
cWW-cSS-tSS-tSH-L-cWW-tHW-cWW
Number of instances in this motif group
5

Unit IDs

6WDC|1|3|G|242
6WDC|1|3|A|243
6WDC|1|3|U|244
6WDC|1|3|U|245
6WDC|1|3|A|246
6WDC|1|3|G|247
*
6WDC|1|3|C|277
6WDC|1|3|G|278
6WDC|1|3|A|279
6WDC|1|3|C|280
6WDC|1|3|G|281
6WDC|1|3|A|282
6WDC|1|3|U|283
6WDC|1|3|C|284

Current chains

Chain 3
16S ribosomal RNA

Nearby chains

Chain Q
30S ribosomal protein S12
Chain V
30S ribosomal protein S17

Coloring options:


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