IL_6WDC_187
3D structure
- PDB id
- 6WDC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure IV-B)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- UGUAG*CGUAGAGA
- Length
- 13 nucleotides
- Bulged bases
- 6WDC|1|3|A|702
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6WDC_187 not in the Motif Atlas
- Homologous match to IL_5J7L_035
- Geometric discrepancy: 0.1665
- The information below is about IL_5J7L_035
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_01488.3
- Basepair signature
- cWW-tSS-tSH-L-R-tHS-L-cWW
- Number of instances in this motif group
- 10
Unit IDs
6WDC|1|3|U|684
6WDC|1|3|G|685
6WDC|1|3|U|686
6WDC|1|3|A|687
6WDC|1|3|G|688
*
6WDC|1|3|C|699
6WDC|1|3|G|700
6WDC|1|3|U|701
6WDC|1|3|A|702
6WDC|1|3|G|703
6WDC|1|3|A|704
6WDC|1|3|G|705
6WDC|1|3|A|706
Current chains
- Chain 3
- 16S ribosomal RNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain P
- 30S ribosomal protein S11
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