IL_6WNT_072

3D structure

PDB id

6WNT (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit without free 5S rRNA and perturbed PTC

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

6WNT|1|4|A|1929, 6WNT|1|4|C|1944, 6WNT|1|4|U|1948

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WNT_072 not in the Motif Atlas

Geometric match to IL_5J7L_313

Geometric discrepancy: 0.0804

The information below is about IL_5J7L_313

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

6WNT|1|4|U|1926
6WNT|1|4|G|1927
6WNT|1|4|C|1928
6WNT|1|4|A|1929
6WNT|1|4|A|1930
6WNT|1|4|A|1931
6WNT|1|4|C|1932
*
6WNT|1|4|G|1941
6WNT|1|4|G|1942
6WNT|1|4|A|1943
6WNT|1|4|C|1944
6WNT|1|4|G|1945
6WNT|1|4|U|1946
6WNT|1|4|A|1947
6WNT|1|4|U|1948
6WNT|1|4|A|1949

Current chains

Chain 4

23s-5s joint ribosomal RNA

Nearby chains

Chain b

50S ribosomal protein L2