IL_6WNT_096

3D structure

PDB id

6WNT (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit without free 5S rRNA and perturbed PTC

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUGAG*CGAGAUGAG

Length

14 nucleotides

Bulged bases

6WNT|1|4|G|2908

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WNT_096 not in the Motif Atlas

Geometric match to IL_5J7L_345

Geometric discrepancy: 0.101

The information below is about IL_5J7L_345

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.3

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

6WNT|1|4|C|2764
6WNT|1|4|U|2765
6WNT|1|4|G|2766
6WNT|1|4|A|2767
6WNT|1|4|G|2768
*
6WNT|1|4|C|2902
6WNT|1|4|G|2903
6WNT|1|4|A|2904
6WNT|1|4|G|2905
6WNT|1|4|A|2906
6WNT|1|4|U|2907
6WNT|1|4|G|2908
6WNT|1|4|A|2909
6WNT|1|4|G|2910

Current chains

Chain 4

23s-5s joint ribosomal RNA

Nearby chains

Chain c

50S ribosomal protein L3

Chain j

50S ribosomal protein L13