IL_6WNT_099

3D structure

PDB id

6WNT (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit without free 5S rRNA and perturbed PTC

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGUUC*GGUAG

Length

10 nucleotides

Bulged bases

6WNT|1|4|U|2817, 6WNT|1|4|U|2818

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WNT_099 not in the Motif Atlas

Geometric match to IL_5J7L_348

Geometric discrepancy: 0.0727

The information below is about IL_5J7L_348

Detailed Annotation

UAA/GAN related, with intercalation

Broad Annotation

UAA/GAN related, with intercalation

Motif group

IL_23774.1

Basepair signature

cWW-L-R-L-tHS-cWW

Number of instances in this motif group

11

Unit IDs

6WNT|1|4|U|2815
6WNT|1|4|G|2816
6WNT|1|4|U|2817
6WNT|1|4|U|2818
6WNT|1|4|C|2819
*
6WNT|1|4|G|2846
6WNT|1|4|G|2847
6WNT|1|4|U|2848
6WNT|1|4|A|2849
6WNT|1|4|G|2850

Current chains

Chain 4

23s-5s joint ribosomal RNA

Nearby chains

Chain c

50S ribosomal protein L3

Chain n

50S ribosomal protein L17

Chain p

50S ribosomal protein L19