IL_6WOO_018

3D structure

PDB id

6WOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UAUCAA*UUUCAACG

Length

14 nucleotides

Bulged bases

6WOO|1|2|U|312, 6WOO|1|2|C|350

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WOO_018 not in the Motif Atlas

Homologous match to IL_4V88_402

Geometric discrepancy: 0.0949

The information below is about IL_4V88_402

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_45067.5

Basepair signature

cWW-tSH-tSS-tHS-R-cWW-cWW-R

Number of instances in this motif group

16

Unit IDs

6WOO|1|2|U|310
6WOO|1|2|A|311
6WOO|1|2|U|312
6WOO|1|2|C|313
6WOO|1|2|A|314
6WOO|1|2|A|315
*
6WOO|1|2|U|347
6WOO|1|2|U|348
6WOO|1|2|U|349
6WOO|1|2|C|350
6WOO|1|2|A|351
6WOO|1|2|A|352
6WOO|1|2|C|353
6WOO|1|2|G|354

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain II

eS8

Chain LL

uS17

Chain XX

uS12