IL_6WOO_031

3D structure

PDB id

6WOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUGCCAG*CGGUAAUUC

Length

16 nucleotides

Bulged bases

6WOO|1|2|A|578, 6WOO|1|2|U|580

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WOO_031 not in the Motif Atlas

Homologous match to IL_4V88_415

Geometric discrepancy: 0.1134

The information below is about IL_4V88_415

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

6WOO|1|2|G|561
6WOO|1|2|U|562
6WOO|1|2|G|563
6WOO|1|2|C|564
6WOO|1|2|C|565
6WOO|1|2|A|566
6WOO|1|2|G|567
*
6WOO|1|2|C|574
6WOO|1|2|G|575
6WOO|1|2|G|576
6WOO|1|2|U|577
6WOO|1|2|A|578
6WOO|1|2|A|579
6WOO|1|2|U|580
6WOO|1|2|U|581
6WOO|1|2|C|582

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain DD

uS3

Chain XX

uS12

Chain ee

eS30