IL_6WOO_034
3D structure
- PDB id
- 6WOO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CGUAG*UCAAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6WOO_034 not in the Motif Atlas
- Homologous match to IL_4V88_418
- Geometric discrepancy: 0.0844
- The information below is about IL_4V88_418
- Detailed Annotation
- tSH-tHW-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_17136.4
- Basepair signature
- cWW-R-L-tHS-tHW-cWW
- Number of instances in this motif group
- 18
Unit IDs
6WOO|1|2|C|626
6WOO|1|2|G|627
6WOO|1|2|U|628
6WOO|1|2|A|629
6WOO|1|2|G|630
*
6WOO|1|2|U|968
6WOO|1|2|C|969
6WOO|1|2|A|970
6WOO|1|2|A|971
6WOO|1|2|G|972
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain LL
- uS17
- Chain NN
- uS15
- Chain WW
- uS8
- Chain XX
- uS12
Coloring options: