IL_6WOO_042

3D structure

PDB id

6WOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGGGG*CAAG

Length

9 nucleotides

Bulged bases

6WOO|1|2|G|876

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WOO_042 not in the Motif Atlas

Geometric match to IL_4V88_431

Geometric discrepancy: 0.1188

The information below is about IL_4V88_431

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

6WOO|1|2|C|874
6WOO|1|2|G|875
6WOO|1|2|G|876
6WOO|1|2|G|877
6WOO|1|2|G|878
*
6WOO|1|2|C|950
6WOO|1|2|A|951
6WOO|1|2|A|952
6WOO|1|2|G|953

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain BB

eS1

Chain NN

uS15

Chain aa

eS26