IL_6WOO_043

3D structure

PDB id

6WOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUAU*AGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WOO_043 not in the Motif Atlas

Homologous match to IL_4V88_432

Geometric discrepancy: 0.0711

The information below is about IL_4V88_432

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

6WOO|1|2|G|885
6WOO|1|2|U|886
6WOO|1|2|A|887
6WOO|1|2|U|888
*
6WOO|1|2|A|924
6WOO|1|2|G|925
6WOO|1|2|A|926
6WOO|1|2|C|927

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain BB

eS1

Chain OO

uS11

Chain aa

eS26