IL_6WOO_104
3D structure
- PDB id
- 6WOO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GAAUGUAG*UAUUAUAGC
- Length
- 17 nucleotides
- Bulged bases
- 6WOO|1|5|U|534, 6WOO|1|5|U|558
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6WOO_104 not in the Motif Atlas
- Homologous match to IL_5TBW_020
- Geometric discrepancy: 0.1676
- The information below is about IL_5TBW_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_07703.1
- Basepair signature
- cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
6WOO|1|5|G|531
6WOO|1|5|A|532
6WOO|1|5|A|533
6WOO|1|5|U|534
6WOO|1|5|G|535
6WOO|1|5|U|536
6WOO|1|5|A|537
6WOO|1|5|G|538
*
6WOO|1|5|U|553
6WOO|1|5|A|554
6WOO|1|5|U|555
6WOO|1|5|U|556
6WOO|1|5|A|557
6WOO|1|5|U|558
6WOO|1|5|A|559
6WOO|1|5|G|560
6WOO|1|5|C|561
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain M
- eL14
- Chain S
- eL20
Coloring options: