IL_6WOO_118
3D structure
- PDB id
- 6WOO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GGG*UAAUC
- Length
- 8 nucleotides
- Bulged bases
- 6WOO|1|5|G|908, 6WOO|1|5|A|920, 6WOO|1|5|A|921
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6WOO_118 not in the Motif Atlas
- Geometric match to IL_5TBW_033
- Geometric discrepancy: 0.0987
- The information below is about IL_5TBW_033
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_90991.8
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
6WOO|1|5|G|907
6WOO|1|5|G|908
6WOO|1|5|G|909
*
6WOO|1|5|U|919
6WOO|1|5|A|920
6WOO|1|5|A|921
6WOO|1|5|U|922
6WOO|1|5|C|923
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain A
- uL2
- Chain N
- eL15
- Chain P
- uL22
- Chain j
- eL37
Coloring options: