IL_6WOO_123
3D structure
- PDB id
- 6WOO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GAGGUAA*UAAAUAU
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6WOO_123 not in the Motif Atlas
- Homologous match to IL_8C3A_041
- Geometric discrepancy: 0.1159
- The information below is about IL_8C3A_041
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_93830.3
- Basepair signature
- cWW-cWW-L-R-cSH-R-tWH-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
6WOO|1|5|G|991
6WOO|1|5|A|992
6WOO|1|5|G|993
6WOO|1|5|G|994
6WOO|1|5|U|995
6WOO|1|5|A|996
6WOO|1|5|A|997
*
6WOO|1|5|U|1052
6WOO|1|5|A|1053
6WOO|1|5|A|1054
6WOO|1|5|A|1055
6WOO|1|5|U|1056
6WOO|1|5|A|1057
6WOO|1|5|U|1058
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain 7
- 5S ribosomal RNA; 5S rRNA
- Chain D
- uL18
- Chain F
- uL30
- Chain I
- uL16
- Chain S
- eL20
- Chain T
- eL21
- Chain b
- eL29
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