IL_6WOO_140

3D structure

PDB id

6WOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUGGC*GAAUC

Length

10 nucleotides

Bulged bases

6WOO|1|5|G|1236

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WOO_140 not in the Motif Atlas

Homologous match to IL_8P9A_283

Geometric discrepancy: 0.4077

The information below is about IL_8P9A_283

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_16218.3

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

6WOO|1|5|G|1234
6WOO|1|5|U|1235
6WOO|1|5|G|1236
6WOO|1|5|G|1237
6WOO|1|5|C|1238
*
6WOO|1|5|G|1250
6WOO|1|5|A|1251
6WOO|1|5|A|1252
6WOO|1|5|U|1253
6WOO|1|5|C|1254

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain I

uL16

Chain K

L10