IL_6WOO_148

3D structure

PDB id

6WOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUCAAC*GGAC

Length

10 nucleotides

Bulged bases

6WOO|1|5|G|1514

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WOO_148 not in the Motif Atlas

Homologous match to IL_5TBW_062

Geometric discrepancy: 0.1393

The information below is about IL_5TBW_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_51005.1

Basepair signature

cWW-L-R-tWH-cWW-L-L

Number of instances in this motif group

2

Unit IDs

6WOO|1|5|G|1500
6WOO|1|5|U|1501
6WOO|1|5|C|1502
6WOO|1|5|A|1503
6WOO|1|5|A|1504
6WOO|1|5|C|1505
*
6WOO|1|5|G|1513
6WOO|1|5|G|1514
6WOO|1|5|A|1515
6WOO|1|5|C|1516

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain P

uL22

Chain R

eL19

Chain l

eL39