IL_6WOO_153

3D structure

PDB id

6WOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGAAU*AGGAA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WOO_153 not in the Motif Atlas

Geometric match to IL_5TBW_067

Geometric discrepancy: 0.1426

The information below is about IL_5TBW_067

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_95716.2

Basepair signature

cWW-cWW-tHS-tHS-tSH-cWW

Number of instances in this motif group

18

Unit IDs

6WOO|1|5|U|1645
6WOO|1|5|G|1646
6WOO|1|5|A|1647
6WOO|1|5|A|1648
6WOO|1|5|U|1649
*
6WOO|1|5|A|1806
6WOO|1|5|G|1807
6WOO|1|5|G|1808
6WOO|1|5|A|1809
6WOO|1|5|A|1810

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain A

uL2

Chain Z

eL27

Chain g

eL34