IL_6WOO_160

3D structure

PDB id

6WOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AAUAAUG*CUAU

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WOO_160 not in the Motif Atlas

Homologous match to IL_8C3A_080

Geometric discrepancy: 0.0852

The information below is about IL_8C3A_080

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_49460.3

Basepair signature

cWW-L-R-L-R-L-cWW-L

Number of instances in this motif group

3

Unit IDs

6WOO|1|5|A|1883
6WOO|1|5|A|1884
6WOO|1|5|U|1885
6WOO|1|5|A|1886
6WOO|1|5|A|1887
6WOO|1|5|U|1888
6WOO|1|5|G|1889
*
6WOO|1|5|C|2346
6WOO|1|5|U|2347
6WOO|1|5|A|2348
6WOO|1|5|U|2349

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain B

uL3

Chain P

uL22

Chain d

eL31