IL_6WOO_185

3D structure

PDB id

6WOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGAG*CGCCAGUGAAAUAC

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WOO_185 not in the Motif Atlas

Geometric match to IL_1MZP_003

Geometric discrepancy: 0.3944

The information below is about IL_1MZP_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_75283.2

Basepair signature

cWW-tSS-L-R-L-tHS-L-cWW-L-tWH-tWH-L-L-R

Number of instances in this motif group

3

Unit IDs

6WOO|1|5|G|2466
6WOO|1|5|G|2467
6WOO|1|5|A|2468
6WOO|1|5|G|2469
*
6WOO|1|5|C|2476
6WOO|1|5|G|2477
6WOO|1|5|C|2478
6WOO|1|5|C|2479
6WOO|1|5|A|2480
6WOO|1|5|G|2481
6WOO|1|5|U|2482
6WOO|1|5|G|2483
6WOO|1|5|A|2484
6WOO|1|5|A|2485
6WOO|1|5|A|2486
6WOO|1|5|U|2487
6WOO|1|5|A|2488
6WOO|1|5|C|2489

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain q

uL1