IL_6WOO_207
3D structure
- PDB id
- 6WOO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CUUAGUAC*GGAACAG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6WOO_207 not in the Motif Atlas
- Homologous match to IL_5TBW_116
- Geometric discrepancy: 0.1038
- The information below is about IL_5TBW_116
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.8
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
6WOO|1|5|C|3018
6WOO|1|5|U|3019
6WOO|1|5|U|3020
6WOO|1|5|A|3021
6WOO|1|5|G|3022
6WOO|1|5|U|3023
6WOO|1|5|A|3024
6WOO|1|5|C|3025
*
6WOO|1|5|G|3030
6WOO|1|5|G|3031
6WOO|1|5|A|3032
6WOO|1|5|A|3033
6WOO|1|5|C|3034
6WOO|1|5|A|3035
6WOO|1|5|G|3036
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain 1
- eIF5B
- Chain B
- uL3
- Chain H
- uL6
- Chain V
- uL14
- Chain m
- eL40
Coloring options: