IL_6WOO_208

3D structure

PDB id

6WOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UAAUU*ACCA

Length

9 nucleotides

Bulged bases

6WOO|1|5|C|3092

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WOO_208 not in the Motif Atlas

Homologous match to IL_5TBW_117

Geometric discrepancy: 0.1143

The information below is about IL_5TBW_117

Detailed Annotation

Major groove minor groove platform with tHH

Broad Annotation

No text annotation

Motif group

IL_14592.1

Basepair signature

cWW-tHH-cWW-L-L

Number of instances in this motif group

4

Unit IDs

6WOO|1|5|U|3047
6WOO|1|5|A|3048
6WOO|1|5|A|3049
6WOO|1|5|U|3050
6WOO|1|5|U|3051
*
6WOO|1|5|A|3091
6WOO|1|5|C|3092
6WOO|1|5|C|3093
6WOO|1|5|A|3094

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain B

uL3

Chain V

uL14

Chain W

eL24