IL_6WOO_211

3D structure

PDB id

6WOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AUUAU*AGAAU

Length

10 nucleotides

Bulged bases

6WOO|1|5|A|3130

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WOO_211 not in the Motif Atlas

Homologous match to IL_5TBW_120

Geometric discrepancy: 0.0881

The information below is about IL_5TBW_120

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_89002.4

Basepair signature

cWW-tWH-cWW-L-cWW-tHS

Number of instances in this motif group

15

Unit IDs

6WOO|1|5|A|3103
6WOO|1|5|U|3104
6WOO|1|5|U|3105
6WOO|1|5|A|3106
6WOO|1|5|U|3107
*
6WOO|1|5|A|3127
6WOO|1|5|G|3128
6WOO|1|5|A|3129
6WOO|1|5|A|3130
6WOO|1|5|U|3131

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain H

uL6

Chain O

uL13

Chain m

eL40