IL_6WOO_219

3D structure

PDB id

6WOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CACUUG*CUUGGG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WOO_219 not in the Motif Atlas

Geometric match to IL_4EYA_005

Geometric discrepancy: 0.394

The information below is about IL_4EYA_005

Detailed Annotation

Tandem non-canonical cWW pairs with near WC pairs

Broad Annotation

Tandem non-canonical cWW pairs with near WC pairs

Motif group

IL_82292.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-cWW

Number of instances in this motif group

3

Unit IDs

6WOO|1|5|C|3233
6WOO|1|5|A|3234
6WOO|1|5|C|3235
6WOO|1|5|U|3236
6WOO|1|5|U|3237
6WOO|1|5|G|3238
*
6WOO|1|5|C|3249
6WOO|1|5|U|3250
6WOO|1|5|U|3251
6WOO|1|5|G|3252
6WOO|1|5|G|3253
6WOO|1|5|G|3254

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain O

uL13