IL_6WOO_243
3D structure
- PDB id
- 6WOO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UGCAUGG*UCUGUGAUG
- Length
- 16 nucleotides
- Bulged bases
- 6WOO|1|2|C|1274, 6WOO|1|2|U|1432, 6WOO|1|2|G|1435
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6WOO_243 not in the Motif Atlas
- Homologous match to IL_8P9A_439
- Geometric discrepancy: 0.1227
- The information below is about IL_8P9A_439
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_99893.1
- Basepair signature
- cWW-tHS-tWH-cWH-cWW-L-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
6WOO|1|2|U|1272
6WOO|1|2|G|1273
6WOO|1|2|C|1274
6WOO|1|2|A|1275
6WOO|1|2|U|1276
6WOO|1|2|G|1277
6WOO|1|2|G|1278
*
6WOO|1|2|U|1430
6WOO|1|2|C|1431
6WOO|1|2|U|1432
6WOO|1|2|G|1433
6WOO|1|2|U|1434
6WOO|1|2|G|1435
6WOO|1|2|A|1436
6WOO|1|2|U|1437
6WOO|1|2|G|1438
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain DD
- uS3
- Chain KK
- eS10
- Chain UU
- uS10
- Chain dd
- uS14
Coloring options: