IL_6WOO_257

3D structure

PDB id

6WOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CACAA*UUGCG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WOO_257 not in the Motif Atlas

Homologous match to IL_8P9A_349

Geometric discrepancy: 0.5146

The information below is about IL_8P9A_349

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_71154.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

17

Unit IDs

6WOO|1|5|C|3164
6WOO|1|5|A|3165
6WOO|1|5|C|3166
6WOO|1|5|A|3167
6WOO|1|5|A|3168
*
6WOO|1|5|U|3282
6WOO|1|5|U|3283
6WOO|1|5|G|3284
6WOO|1|5|C|3285
6WOO|1|5|G|3286

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain P

uL22

Chain f

eL33