IL_6WOO_257
3D structure
- PDB id
- 6WOO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CACAA*UUGCG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6WOO_257 not in the Motif Atlas
- Homologous match to IL_8P9A_349
- Geometric discrepancy: 0.5146
- The information below is about IL_8P9A_349
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_49751.4
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 16
Unit IDs
6WOO|1|5|C|3164
6WOO|1|5|A|3165
6WOO|1|5|C|3166
6WOO|1|5|A|3167
6WOO|1|5|A|3168
*
6WOO|1|5|U|3282
6WOO|1|5|U|3283
6WOO|1|5|G|3284
6WOO|1|5|C|3285
6WOO|1|5|G|3286
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain P
- uL22
- Chain f
- eL33
Coloring options: