IL_6XA1_032

3D structure

PDB id

6XA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a drug-like compound stalled human translation termination complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GAAGGUGG*UGUUACAGC

Length

17 nucleotides

Bulged bases

6XA1|1|L5|G|739, 6XA1|1|L5|C|903

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XA1_032 not in the Motif Atlas

Geometric match to IL_5TBW_020

Geometric discrepancy: 0.2082

The information below is about IL_5TBW_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_07703.1

Basepair signature

cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

6XA1|1|L5|G|736
6XA1|1|L5|A|737
6XA1|1|L5|A|738
6XA1|1|L5|G|739
6XA1|1|L5|G|740
6XA1|1|L5|U|741
6XA1|1|L5|G|742
6XA1|1|L5|G|743
*
6XA1|1|L5|U|898
6XA1|1|L5|G|899
6XA1|1|L5|U|900
6XA1|1|L5|U|901
6XA1|1|L5|A|902
6XA1|1|L5|C|903
6XA1|1|L5|A|904
6XA1|1|L5|G|905
6XA1|1|L5|C|906

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LM

60S ribosomal protein L14

Chain LS

60S ribosomal protein L18a