IL_6XA1_055

3D structure

PDB id

6XA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a drug-like compound stalled human translation termination complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

G(OMG)G*UAAUC

Length

8 nucleotides

Bulged bases

6XA1|1|L5|A|1624, 6XA1|1|L5|A|1625

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XA1_055 not in the Motif Atlas

Geometric match to IL_5TBW_033

Geometric discrepancy: 0.1119

The information below is about IL_5TBW_033

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_90991.8

Basepair signature

cWW-cWW

Number of instances in this motif group

6

Unit IDs

6XA1|1|L5|G|1611
6XA1|1|L5|OMG|1612
6XA1|1|L5|G|1613
*
6XA1|1|L5|U|1623
6XA1|1|L5|A|1624
6XA1|1|L5|A|1625
6XA1|1|L5|U|1626
6XA1|1|L5|C|1627

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain LN

60S ribosomal protein L15

Chain LP

60S ribosomal protein L17

Chain Lj

60S ribosomal protein L37

Chain NC

Stalled Nascent chain