IL_6XA1_147
3D structure
- PDB id
- 6XA1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a drug-like compound stalled human translation termination complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- UGUA(PSU)(OMG)U*GCGAAG
- Length
- 13 nucleotides
- Bulged bases
- 6XA1|1|L5|U|4604
- QA status
- Modified nucleotides: PSU, OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6XA1_147 not in the Motif Atlas
- Geometric match to IL_5J7L_063
- Geometric discrepancy: 0.3931
- The information below is about IL_5J7L_063
- Detailed Annotation
- Triple sheared related
- Broad Annotation
- Triple sheared
- Motif group
- IL_80231.1
- Basepair signature
- cWW-L-R-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 2
Unit IDs
6XA1|1|L5|U|4602
6XA1|1|L5|G|4603
6XA1|1|L5|U|4604
6XA1|1|L5|A|4605
6XA1|1|L5|PSU|4606
6XA1|1|L5|OMG|4607
6XA1|1|L5|U|4608
*
6XA1|1|L5|G|4631
6XA1|1|L5|C|4632
6XA1|1|L5|G|4633
6XA1|1|L5|A|4634
6XA1|1|L5|A|4635
6XA1|1|L5|G|4636
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LB
- 60S ribosomal protein L3
- Chain LW
- 60S ribosomal protein L24
- Chain Ld
- 60S ribosomal protein L31
Coloring options: