IL_6XA1_161

3D structure

PDB id

6XA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a drug-like compound stalled human translation termination complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

G(PSU)U*GUCAGC

Length

9 nucleotides

Bulged bases

6XA1|1|L5|G|5014

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XA1_161 not in the Motif Atlas

Homologous match to IL_5TBW_132

Geometric discrepancy: 0.3605

The information below is about IL_5TBW_132

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_84428.1

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

6XA1|1|L5|G|4965
6XA1|1|L5|PSU|4966
6XA1|1|L5|U|4967
*
6XA1|1|L5|G|5010
6XA1|1|L5|U|5011
6XA1|1|L5|C|5012
6XA1|1|L5|A|5013
6XA1|1|L5|G|5014
6XA1|1|L5|C|5015

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LW

60S ribosomal protein L24

Chain Ld

60S ribosomal protein L31