IL_6XA1_280

3D structure

PDB id

6XA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a drug-like compound stalled human translation termination complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GUAGU(A2M)(OMG)*CGAAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XA1_280 not in the Motif Atlas

Homologous match to IL_8C3A_065

Geometric discrepancy: 0.0844

The information below is about IL_8C3A_065

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_76042.3

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

6XA1|1|L5|G|2345
6XA1|1|L5|U|2346
6XA1|1|L5|A|2347
6XA1|1|L5|G|2348
6XA1|1|L5|U|2349
6XA1|1|L5|A2M|2350
6XA1|1|L5|OMG|2351
*
6XA1|1|L5|C|3837
6XA1|1|L5|G|3838
6XA1|1|L5|A|3839
6XA1|1|L5|A|3840
6XA1|1|L5|A|3841
6XA1|1|L5|C|3842

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LP

60S ribosomal protein L17