IL_6XA1_281

3D structure

PDB id

6XA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a drug-like compound stalled human translation termination complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

(PSU)GAAC*GAA

Length

8 nucleotides

Bulged bases

6XA1|1|L5|A|2415

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XA1_281 not in the Motif Atlas

Homologous match to IL_8C3A_482

Geometric discrepancy: 0.2789

The information below is about IL_8C3A_482

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_04395.1

Basepair signature

cWW-cWS-tWH-cWW-L

Number of instances in this motif group

3

Unit IDs

6XA1|1|L5|PSU|2402
6XA1|1|L5|G|2403
6XA1|1|L5|A|2404
6XA1|1|L5|A|2405
6XA1|1|L5|C|2406
*
6XA1|1|L5|G|2414
6XA1|1|L5|A|2415
6XA1|1|L5|A|2416

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LP

60S ribosomal protein L17

Chain LR

60S ribosomal protein L19

Chain Ll

60S ribosomal protein L39