IL_6XA1_298

3D structure

PDB id

6XA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a drug-like compound stalled human translation termination complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UGUA(PSU)(OMG)*CGAAG

Length

11 nucleotides

Bulged bases

6XA1|1|L5|U|4604, 6XA1|1|L5|PSU|4606

QA status

Modified nucleotides: PSU, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XA1_298 not in the Motif Atlas

Homologous match to IL_8C3A_127

Geometric discrepancy: 0.4512

The information below is about IL_8C3A_127

Detailed Annotation

UAA/GAN related

Broad Annotation

UAA/GAN related

Motif group

IL_17136.4

Basepair signature

cWW-R-L-tHS-tHW-cWW

Number of instances in this motif group

18

Unit IDs

6XA1|1|L5|U|4602
6XA1|1|L5|G|4603
6XA1|1|L5|U|4604
6XA1|1|L5|A|4605
6XA1|1|L5|PSU|4606
6XA1|1|L5|OMG|4607
*
6XA1|1|L5|C|4632
6XA1|1|L5|G|4633
6XA1|1|L5|A|4634
6XA1|1|L5|A|4635
6XA1|1|L5|G|4636

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LW

60S ribosomal protein L24

Chain Ld

60S ribosomal protein L31