IL_6XE0_025
3D structure
- PDB id
- 6XE0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of NusG-CTD bound to 70S ribosome (30S: NusG-CTD fragment)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.8 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUAC
- Length
- 16 nucleotides
- Bulged bases
- 6XE0|1|W|A|532, 6XE0|1|W|U|534, 6XE0|1|W|A|535
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6XE0_025 not in the Motif Atlas
- Geometric match to IL_4V88_415
- Geometric discrepancy: 0.1932
- The information below is about IL_4V88_415
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
6XE0|1|W|G|515
6XE0|1|W|U|516
6XE0|1|W|G|517
6XE0|1|W|C|518
6XE0|1|W|C|519
6XE0|1|W|A|520
6XE0|1|W|G|521
*
6XE0|1|W|C|528
6XE0|1|W|G|529
6XE0|1|W|G|530
6XE0|1|W|U|531
6XE0|1|W|A|532
6XE0|1|W|A|533
6XE0|1|W|U|534
6XE0|1|W|A|535
6XE0|1|W|C|536
Current chains
- Chain W
- 16s rRNA
Nearby chains
- Chain B
- 30S ribosomal protein S3
- Chain C
- 30S ribosomal protein S4
- Chain K
- 30S ribosomal protein S12
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