IL_6XE0_035

3D structure

PDB id

6XE0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of NusG-CTD bound to 70S ribosome (30S: NusG-CTD fragment)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.8 Å

Loop

Sequence

UGUAG*CGUAGAGA

Length

13 nucleotides

Bulged bases

6XE0|1|W|A|702

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XE0_035 not in the Motif Atlas

Homologous match to IL_5J7L_035

Geometric discrepancy: 0.2251

The information below is about IL_5J7L_035

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_01488.3

Basepair signature

cWW-tSS-tSH-L-R-tHS-L-cWW

Number of instances in this motif group

10

Unit IDs

6XE0|1|W|U|684
6XE0|1|W|G|685
6XE0|1|W|U|686
6XE0|1|W|A|687
6XE0|1|W|G|688
*
6XE0|1|W|C|699
6XE0|1|W|G|700
6XE0|1|W|U|701
6XE0|1|W|A|702
6XE0|1|W|G|703
6XE0|1|W|A|704
6XE0|1|W|G|705
6XE0|1|W|A|706

Current chains

Chain W

16s rRNA

Nearby chains

Chain J

30S ribosomal protein S11