IL_6XE0_055
3D structure
- PDB id
- 6XE0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of NusG-CTD bound to 70S ribosome (30S: NusG-CTD fragment)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.8 Å
Loop
- Sequence
- GAAG*CGGACC
- Length
- 10 nucleotides
- Bulged bases
- 6XE0|1|W|A|1257, 6XE0|1|W|A|1280, 6XE0|1|W|C|1281
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6XE0_055 not in the Motif Atlas
- Homologous match to IL_5J7L_055
- Geometric discrepancy: 0.2208
- The information below is about IL_5J7L_055
- Detailed Annotation
- 180 degree turn
- Broad Annotation
- No text annotation
- Motif group
- IL_11344.2
- Basepair signature
- cWW-cSS-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
6XE0|1|W|G|1255
6XE0|1|W|A|1256
6XE0|1|W|A|1257
6XE0|1|W|G|1258
*
6XE0|1|W|C|1277
6XE0|1|W|G|1278
6XE0|1|W|G|1279
6XE0|1|W|A|1280
6XE0|1|W|C|1281
6XE0|1|W|C|1282
Current chains
- Chain W
- 16s rRNA
Nearby chains
- Chain B
- 30S ribosomal protein S3
- Chain H
- 30S ribosomal protein S9
- Chain I
- 30S ribosomal protein S10
- Chain M
- 30S ribosomal protein S14
- Chain V
- Transcription termination/antitermination protein NusG
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